Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     12        0   12.5
Qui1     Qui     0.0      1        0    4.0
Qui2     Qui    37.5      8        0   11.0
Qui3     Qui    66.7      6        0   14.0
Qui4     Qui    66.7      3        0    6.0
Rio1     Rio     0.0      7        0    9.5
Rio2     Rio     0.0      6        0   11.0
Rio3     Rio     0.0      6        0   12.0
Rio4     Rio     0.0      5        0    8.0