Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.2     65        0    6.5
Qui1     Qui    67.1     70        0    6.9
Qui2     Qui    80.9     68        0    5.8
Qui3     Qui    73.7    114        0    7.3
Qui4     Qui    68.9     90        0    6.3
Rio1     Rio    55.8    104        0    7.5
Rio2     Rio    66.0     47        0    5.6
Rio3     Rio    62.0     71        0    6.3
Rio4     Rio    62.5     32        0    5.3