Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    77016492 G>A  Pum=1.0  Qui=0.615  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      8        0   16.0
Qui1     Qui   100.0      1        0    5.0
Qui2     Qui     8.3     12        0   15.0
Qui3     Qui    25.0      4        0    7.0
Qui4     Qui     0.0     10        0   19.5
Rio1     Rio   100.0      5        0    7.0
Rio2     Rio   100.0      3        0    5.0
Rio3     Rio    33.3      3        0    4.0
Rio4     Rio    83.3      6        0    7.0