Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 38
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 15 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     16        0    3.7
Qui1     Qui     0.0     36        0    4.2
Qui2     Qui    12.1     33        0    4.5
Qui3     Qui     0.0     60        0    5.6
Qui4     Qui    28.8    125        0   14.5
Rio1     Rio     1.2     85        0    8.0
Rio2     Rio     1.2     86        0    7.4
Rio3     Rio     0.0     71        0    6.2
Rio4     Rio     3.4     58        0    6.0