Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      8        0   12.0
Qui1     Qui   100.0      3        0    4.0
Qui2     Qui    50.0      6        0    7.5
Qui3     Qui    50.0      6        0    9.0
Qui4     Qui    25.0      8        0   12.0
Rio1     Rio   100.0      8        0   13.0
Rio2     Rio   100.0      9        0   10.0
Rio3     Rio   100.0     14        0   18.0
Rio4     Rio   100.0      7        0   10.0