Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

14 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    55.8     43        0    7.7
Qui1     Qui     0.0     18        0    4.5
Qui2     Qui    10.9     46        0    5.5
Qui3     Qui     7.4     68        0   13.0
Qui4     Qui    12.0     25        0    6.0
Rio1     Rio              0        0    0.0
Rio2     Rio    31.6     79        0   17.8
Rio3     Rio    40.0     20        0    8.2
Rio4     Rio    36.0     50        0   14.0