Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 59
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    38053323 G>A  Pum=0.0  Qui=0.5  Rio=0.0
    38053337 G>A  Pum=0.0  Qui=0.5  Rio=0.0
    38053614 T>A  Pum=0.455  Qui=0.154  Rio=0.789
    38053693 C>A  Pum=0.6  Qui=0.3  Rio=0.8

18 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    91.5     59        0    6.6
Qui1     Qui    81.2     32        1    5.1
Qui2     Qui    80.0     35        0    3.1
Qui3     Qui    73.9     46        0    4.4
Qui4     Qui    65.1     63        0    5.6
Rio1     Rio    91.0     78        1    6.5
Rio2     Rio    93.7     79        0    4.9
Rio3     Rio    92.3     78        0    5.3
Rio4     Rio    79.4     34        1    4.3