Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      6        0   14.0
Qui1     Qui    28.6      7        0   18.0
Qui2     Qui   100.0      1        0    4.0
Qui3     Qui    55.6      9        0   14.0
Qui4     Qui    33.3      3        0    8.0
Rio1     Rio   100.0     13        0   29.0
Rio2     Rio    88.9      9        0   12.0
Rio3     Rio    75.0      4        0    8.0
Rio4     Rio   100.0      1        0    3.0