Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 23
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     7.7     26        0    2.1
Qui1     Qui    61.7    329        0   12.4
Qui2     Qui    76.7    180        0    7.0
Qui3     Qui    40.0     15        0    1.1
Qui4     Qui    63.8     80        0    5.0
Rio1     Rio     5.7    265        0   13.5
Rio2     Rio     1.8     57        0    3.8
Rio3     Rio    55.2     96        0    5.8
Rio4     Rio     7.3    287        0   10.5