Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    108065021 T>C  Pum=0.077  Qui=0.905  Rio=0.355

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      6        1   12.0
Qui1     Qui   100.0      4        0    8.0
Qui2     Qui   100.0      2        0    7.0
Qui3     Qui   100.0      8        0   16.0
Qui4     Qui   100.0      5        0   12.0
Rio1     Rio    20.0      5        1   24.0
Rio2     Rio    50.0      2        1   11.0
Rio3     Rio    20.0      5        1   16.0
Rio4     Rio    33.3      3        1   14.5