Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    105663568 G>T  Pum=0.222  Qui=0.0  Rio=0.618

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0     12        0   15.0
Qui1     Qui   100.0      5        0    7.0
Qui2     Qui    90.0     10        0   12.0
Qui3     Qui    87.5      8        0   13.0
Qui4     Qui    87.5      8        0    9.0
Rio1     Rio    33.3     21        0   23.0
Rio2     Rio    60.0     15        0   17.0
Rio3     Rio    75.0      4        0    6.0
Rio4     Rio    60.0     10        0   11.0