Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0   16.0
Qui1     Qui              0        0    2.0
Qui2     Qui   100.0      5        0   20.0
Qui3     Qui    60.0      5        0   14.5
Qui4     Qui    83.3      6        0   18.0
Rio1     Rio              0        0    7.0
Rio2     Rio     0.0      4        0   11.0
Rio3     Rio     0.0      2        0    6.5
Rio4     Rio     0.0      1        0    8.5