Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      8        0   17.5
Qui1     Qui    57.1      7        0   13.5
Qui2     Qui    60.0      5        0   12.0
Qui3     Qui    44.4      9        0   11.5
Qui4     Qui    50.0     12        0   22.5
Rio1     Rio     0.0      3        0    7.5
Rio2     Rio     0.0      5        0   14.0
Rio3     Rio              0        0    3.0
Rio4     Rio     0.0      4        0    9.0