Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    58340862 G>A  Pum=0.6  Qui=0.583  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    77.8      9        0   12.0
Qui1     Qui    28.6      7        0   12.0
Qui2     Qui    33.3      6        0    7.0
Qui3     Qui    38.5     13        0   16.0
Qui4     Qui    41.7     12        0   16.0
Rio1     Rio   100.0      7        0    8.0
Rio2     Rio   100.0      5        0   10.0
Rio3     Rio   100.0      3        0    6.0
Rio4     Rio   100.0      5        0    5.0