Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 12
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0     20        0    9.4
Qui1     Qui    60.0     10        0    6.9
Qui2     Qui    55.6     18        0    8.9
Qui3     Qui    46.2     13        0    9.2
Qui4     Qui              0        0    3.5
Rio1     Rio    81.2     16        0    5.1
Rio2     Rio    37.5     16        0    6.7
Rio3     Rio    80.0     10        0   10.2
Rio4     Rio     0.0     11        0    7.4