Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 23
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

7 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    55.3     47        0    6.9
Qui1     Qui    22.7     22        0    5.1
Qui2     Qui    52.9     68        0    7.0
Qui3     Qui    42.2     45        0    6.8
Qui4     Qui    48.1     27        0    6.9
Rio1     Rio    20.9     43        0    9.3
Rio2     Rio    28.9     38        0    7.5
Rio3     Rio    25.5     51        0    5.9
Rio4     Rio    34.5     29        0    6.5