Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0      8        0   13.0
Qui1     Qui    83.3      6        0    7.0
Qui2     Qui   100.0      7        0    8.0
Qui3     Qui   100.0     11        0   14.5
Qui4     Qui   100.0      6        0    7.5
Rio1     Rio    61.5     13        0   19.5
Rio2     Rio    42.9      7        0    8.0
Rio3     Rio    71.4      7        0   11.0
Rio4     Rio    57.1      7        0   12.0