Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 54
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

22 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     69        0    4.9
Qui1     Qui    37.5     48        0    4.8
Qui2     Qui    92.6     81        0    6.4
Qui3     Qui    70.6     51        0    4.9
Qui4     Qui    23.4     47        0    3.0
Rio1     Rio     0.0     53        0    5.9
Rio2     Rio     3.8     79        0    5.8
Rio3     Rio     0.0     44        0    4.6
Rio4     Rio     1.7     60        0    6.2