Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    80497707 C>T  Pum=  Qui=0.846  Rio=0.182
    80497736 G>A  Pum=1.0  Qui=0.733  Rio=0.091

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      2        0    5.0
Qui1     Qui              0        1    5.0
Qui2     Qui     0.0      7        0    9.0
Qui3     Qui    40.0      5        0    6.0
Qui4     Qui     0.0      2        1    7.0
Rio1     Rio    66.7      3        0    6.0
Rio2     Rio    75.0      4        1    8.0
Rio3     Rio   100.0      2        0    2.0
Rio4     Rio   100.0      2        0    6.0