Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    78363111 G>T  Pum=0.0  Qui=0.286  Rio=1.0
    78363345 G>A  Pum=1.0  Qui=0.455  Rio=1.0
    78363367 C>T  Pum=1.0  Qui=0.417  Rio=1.0
    78363401 G>T  Pum=1.0  Qui=0.4  Rio=1.0

20 CpGs in target; 20 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0    126        0   11.5
Qui1     Qui     6.2     80        0    7.8
Qui2     Qui    11.8    110        0    9.5
Qui3     Qui    44.7    150        0   11.0
Qui4     Qui    37.4     91        0    7.6
Rio1     Rio     0.0    102        0   13.0
Rio2     Rio     1.7     60        0    9.1
Rio3     Rio     1.5     66        0    7.5
Rio4     Rio     1.0    104        0    9.2