Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 3]
    78334140 G>T  Pum=1.0  Qui=0.4  Rio=1.0
    78334146 G>A  Pum=0.857  Qui=0.4  Rio=0.952
    78334147 C>T  Pum=1.0  Qui=0.091  Rio=1.0
    78334166 C>T  Pum=1.0  Qui=0.083  Rio=1.0
    78334191 T>A  Pum=1.0  Qui=0.345  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      7        1   12.5
Qui1     Qui   100.0      2        0    4.0
Qui2     Qui    60.0      5        0    7.0
Qui3     Qui     0.0      5        0   10.0
Qui4     Qui   100.0      3        0    5.0
Rio1     Rio     0.0      6        1    9.0
Rio2     Rio     0.0      4        0    6.0
Rio3     Rio     0.0      3        1    7.0
Rio4     Rio     0.0      8        0   10.0