Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    78333500 G>A  Pum=1.0  Qui=0.44  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0   10.0
Qui1     Qui    14.3      7        0   16.0
Qui2     Qui    44.4      9        0   15.5
Qui3     Qui    16.7      6        0   11.0
Qui4     Qui    50.0      4        0    6.0
Rio1     Rio     0.0     11        0   20.0
Rio2     Rio     0.0      9        0   14.5
Rio3     Rio     0.0     11        0   12.0
Rio4     Rio     0.0      5        0   15.0