Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0    4.0
Qui1     Qui    62.5      8        0   10.0
Qui2     Qui    42.9      7        0    8.0
Qui3     Qui    50.0      8        0    9.5
Qui4     Qui   100.0      7        0   12.5
Rio1     Rio     0.0     11        0   13.0
Rio2     Rio     0.0      8        0   10.0
Rio3     Rio     0.0      8        0    8.0
Rio4     Rio     0.0      5        0    7.0