Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    78268407 G>A  Pum=1.0  Qui=0.158  Rio=1.0
    78268457 G>A  Pum=  Qui=0.087  Rio=1.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0    5.0
Qui1     Qui    75.0      4        0    7.0
Qui2     Qui   100.0      3        0    6.0
Qui3     Qui    75.0      4        0    7.0
Qui4     Qui    87.5      8        0    9.0
Rio1     Rio     0.0      1        0    4.5
Rio2     Rio     0.0      6        0    8.0
Rio3     Rio     0.0      4        0    5.0
Rio4     Rio     0.0      4        0    5.0