Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 4]
    78265897 G>A  Pum=  Qui=0.462  Rio=1.0
    78265919 G>A  Pum=  Qui=0.385  Rio=1.0
    78265928 G>A  Pum=  Qui=0.357  Rio=1.0
    78265933 C>T  Pum=0.0  Qui=0.2  Rio=1.0
    78265980 G>T  Pum=  Qui=0.368  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      2        0   10.0
Qui1     Qui    50.0      2        1    5.0
Qui2     Qui    60.0      5        0    5.0
Qui3     Qui    33.3      3        1    5.5
Qui4     Qui   100.0      5        0    9.0
Rio1     Rio     0.0      6        1    9.0
Rio2     Rio     0.0     10        1   13.5
Rio3     Rio     0.0      4        0    6.0
Rio4     Rio     0.0      6        1   11.0