Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

22 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     18        0    2.1
Qui1     Qui    49.3     75        0    6.2
Qui2     Qui    65.4     81        0    8.4
Qui3     Qui    45.2     62        0    8.2
Qui4     Qui    83.3     72        0    8.8
Rio1     Rio     0.0     62        0    3.8
Rio2     Rio     2.9     35        0    4.2
Rio3     Rio     3.9     51        0    4.1
Rio4     Rio     1.5     67        0    5.3