Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 33
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 16 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     9.7     31        0    6.8
Qui1     Qui    48.4     64        0    5.9
Qui2     Qui    58.3     60        0    7.7
Qui3     Qui    66.0     97        0   10.3
Qui4     Qui    92.9     85        0    7.5
Rio1     Rio     4.8     63        0    6.2
Rio2     Rio     7.4     68        0   10.1
Rio3     Rio     0.0     55        0    5.6
Rio4     Rio     2.2     45        0    9.2