Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    75037177 G>A  Pum=0.0  Qui=0.538  Rio=0.0

10 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    68.8     32        0    5.1
Qui1     Qui    80.8     26        1    6.8
Qui2     Qui    78.9     38        0    6.7
Qui3     Qui    83.9     31        0    5.3
Qui4     Qui    67.3     52        0    6.9
Rio1     Rio    87.1     31        0    5.9
Rio2     Rio    90.9     33        0    7.2
Rio3     Rio    90.2     41        0    7.8
Rio4     Rio   100.0     28        0    6.1