Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 33
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    29212099 A>G  Pum=  Qui=0.0  Rio=0.6

19 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    37.1     35        0    4.4
Qui1     Qui     6.1     82        0    7.3
Qui2     Qui    19.6     46        0    5.5
Qui3     Qui    22.2     36        0    3.8
Qui4     Qui    10.2     59        0    4.7
Rio1     Rio    12.5     32        0    4.0
Rio2     Rio    11.1     27        0    3.9
Rio3     Rio    31.4     35        0    5.0
Rio4     Rio    11.4     44        0    4.3