Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.8     38        0   10.6
Qui1     Qui    74.2     89        0   10.2
Qui2     Qui    67.1     82        0   11.2
Qui3     Qui    69.1     81        0   15.6
Qui4     Qui    37.7     61        0    9.2
Rio1     Rio    34.5     58        0   12.2
Rio2     Rio    21.9     73        0   10.7
Rio3     Rio    19.0     79        0   10.3
Rio4     Rio    35.4     96        0   16.6