Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

35 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0    2.0
Qui1     Qui    15.4     26        0    3.4
Qui2     Qui    16.7     12        0    3.4
Qui3     Qui    58.8     34        0    5.2
Qui4     Qui    29.4     17        0    2.6
Rio1     Rio     9.8     92        0    6.3
Rio2     Rio     1.4     69        0    3.4
Rio3     Rio    11.5     26        0    2.3
Rio4     Rio     0.0     53        0    6.0