Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    117895112 C>T  Pum=  Qui=1.0  Rio=0.467

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      8        1   12.0
Qui1     Qui     0.0      7        1   14.0
Qui2     Qui     0.0     13        1   18.0
Qui3     Qui     0.0      6        1   12.0
Qui4     Qui     0.0      7        1   10.0
Rio1     Rio    55.6      9        1   16.0
Rio2     Rio   100.0      5        0    7.0
Rio3     Rio    40.0      5        0    6.0
Rio4     Rio    20.0      5        1   10.0