Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    37.7     53        0   10.0
Qui1     Qui    57.6     33        0    6.8
Qui2     Qui    62.7     59        0    8.8
Qui3     Qui    57.1     28        0    5.3
Qui4     Qui    75.8     33        0    6.9
Rio1     Rio    62.9     35        0    8.5
Rio2     Rio    40.0     55        0    9.3
Rio3     Rio    55.1     49        0    5.7
Rio4     Rio    52.9     34        0    7.9