Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    71051577 C>T  Pum=  Qui=0.75  Rio=0.0
    71051605 A>G  Pum=0.0  Qui=0.6  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      2        0    4.0
Qui1     Qui    33.3      3        0    5.0
Qui2     Qui     0.0      2        0    3.0
Qui3     Qui    50.0      2        1    5.0
Qui4     Qui    40.0      5        0    7.0
Rio1     Rio    85.7      7        0   12.0
Rio2     Rio   100.0      3        0    5.0
Rio3     Rio   100.0      2        0    8.0
Rio4     Rio   100.0      2        0    3.0