Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    71046107 T>A  Pum=0.056  Qui=0.683  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      5        0   17.0
Qui1     Qui     0.0      1        0    5.0
Qui2     Qui              0        0   10.5
Qui3     Qui     0.0      3        0   12.0
Qui4     Qui     0.0      2        0   10.0
Rio1     Rio   100.0      2        0   11.0
Rio2     Rio   100.0      2        0    7.0
Rio3     Rio   100.0      2        0   10.5
Rio4     Rio   100.0      1        0    8.0