Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 23
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    29.8     47        0   11.9
Qui1     Qui    32.0     25        0    8.3
Qui2     Qui    33.3     36        0   11.7
Qui3     Qui    36.8     38        0   14.1
Qui4     Qui    51.9     27        0    8.8
Rio1     Rio    51.9     54        0   14.2
Rio2     Rio    61.8     34        0   11.3
Rio3     Rio    32.5     40        0    9.2
Rio4     Rio    58.1     74        0   12.7