Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        0    6.0
Qui1     Qui     0.0      3        0   10.5
Qui2     Qui     0.0      3        0   14.5
Qui3     Qui     0.0      3        0    9.5
Qui4     Qui     0.0      5        0   15.0
Rio1     Rio    50.0      8        0   17.0
Rio2     Rio    75.0      4        0    9.0
Rio3     Rio    50.0      2        0    9.0
Rio4     Rio    66.7      6        0   14.0