Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 16
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

45 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     28        0    6.9
Qui1     Qui     2.4     42        0    8.6
Qui2     Qui     0.0      5        0    4.5
Qui3     Qui     0.0      2        0    3.8
Qui4     Qui     0.0     13        0    5.6
Rio1     Rio              0        0    6.0
Rio2     Rio    36.1     36        0    5.2
Rio3     Rio              0        0    2.3
Rio4     Rio     0.0      3        0    4.5