Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 25
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    91.7     60        0    8.5
Qui1     Qui    69.4     36        0    9.3
Qui2     Qui    70.8     24        0    6.3
Qui3     Qui    81.2     16        0    7.4
Qui4     Qui    69.0     29        0    6.6
Rio1     Rio    89.7     39        0    9.7
Rio2     Rio    95.7     23        0    9.7
Rio3     Rio    94.9     39        0    6.2
Rio4     Rio    85.0     40        0   11.4