Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

16 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    22.0     59        0    8.3
Qui1     Qui     5.3     19        0    4.9
Qui2     Qui    40.0     60        0    7.1
Qui3     Qui    27.3     44        0    9.0
Qui4     Qui    30.8     39        0    4.7
Rio1     Rio     5.8     86        0    9.6
Rio2     Rio     7.4     54        0    6.5
Rio3     Rio    21.4     28        0    5.0
Rio4     Rio    20.0     35        0    8.8