Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0      4        0    5.5
Qui1     Qui    50.0     10        0   10.0
Qui2     Qui    36.4     11        0   12.0
Qui3     Qui    38.5     13        0   14.5
Qui4     Qui    20.0      5        0    7.0
Rio1     Rio    91.7     12        0   12.5
Rio2     Rio    81.2     16        0   16.5
Rio3     Rio   100.0      8        0    9.0
Rio4     Rio    80.0     15        0   16.0