Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    20166163 G>A  Pum=0.0  Qui=0.5  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      5        0   12.5
Qui1     Qui              0        0    1.5
Qui2     Qui    50.0      2        0   10.0
Qui3     Qui    33.3      3        0    9.0
Qui4     Qui    66.7      3        0    6.0
Rio1     Rio   100.0      7        0   14.0
Rio2     Rio   100.0      2        0    5.0
Rio3     Rio   100.0      2        0    6.5
Rio4     Rio   100.0      2        0    6.0