Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 16
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    42.2     45        0    9.4
Qui1     Qui    44.8     58        1    7.4
Qui2     Qui    69.8     53        2   10.3
Qui3     Qui    38.6    132        1   12.2
Qui4     Qui    41.6     77        0   10.7
Rio1     Rio    28.5    137        0   17.6
Rio2     Rio    14.5     55        1   10.2
Rio3     Rio    11.7     94        1   11.8
Rio4     Rio    14.5    145        0   15.6