Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    18076837 C>A  Pum=  Qui=0.727  Rio=0.152

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      1        0    3.0
Qui1     Qui   100.0      2        0    3.0
Qui2     Qui              0        0    5.0
Qui3     Qui   100.0      1        0    9.0
Qui4     Qui   100.0      1        0    9.0
Rio1     Rio     0.0      2        0   23.0
Rio2     Rio   100.0      2        0    4.5
Rio3     Rio     0.0      2        0   15.0
Rio4     Rio    25.0      4        0   19.5