Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    13028756 G>T  Pum=0.2  Qui=0.84  Rio=0.016

25 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    12.2    131        0    7.4
Qui1     Qui    50.5    384        0   15.2
Qui2     Qui    46.0    211        0   11.7
Qui3     Qui    73.8   1009        0   40.1
Qui4     Qui    61.7    637        0   25.9
Rio1     Rio    21.1    308        0   15.2
Rio2     Rio    14.3     35        0    1.5
Rio3     Rio    11.7    111        0    6.1
Rio4     Rio    29.1    189        0   10.0