Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    10859152 T>C  Pum=1.0  Qui=0.833  Rio=0.24

17 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    70.2     84        0    7.7
Qui1     Qui    50.0     92        0    7.4
Qui2     Qui    41.8     79        0    8.0
Qui3     Qui    41.5     53        0    5.8
Qui4     Qui    25.0     28        0    4.4
Rio1     Rio    65.3     75        0    7.0
Rio2     Rio    75.4     61        0    8.5
Rio3     Rio    60.3     58        0    7.0
Rio4     Rio    46.7    107        0    8.2