Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    7.0
Qui1     Qui   100.0      5        0   17.0
Qui2     Qui    80.0      5        0   17.0
Qui3     Qui    50.0      4        0   13.0
Qui4     Qui              0        0    6.0
Rio1     Rio   100.0     10        0   24.0
Rio2     Rio   100.0      3        0    5.0
Rio3     Rio    66.7      3        0    9.0
Rio4     Rio   100.0      6        0   11.0