Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    92.7     55        0    7.8
Qui1     Qui    75.4     65        0    8.7
Qui2     Qui    64.1     78        0   11.7
Qui3     Qui    54.8     73        0    9.0
Qui4     Qui    68.9     74        0   10.0
Rio1     Rio    89.5     86        0   12.3
Rio2     Rio    79.7     79        0   12.3
Rio3     Rio    69.9     83        0    9.4
Rio4     Rio    84.5    110        0   12.6