Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    55.6      9        0   16.0
Qui1     Qui     0.0      2        0    4.0
Qui2     Qui     0.0      7        0    9.0
Qui3     Qui     0.0     12        0   15.0
Qui4     Qui     0.0      9        0   14.0
Rio1     Rio    83.3      6        0   10.0
Rio2     Rio    83.3      6        0   10.0
Rio3     Rio    80.0      5        0    7.5
Rio4     Rio    60.0     10        0   12.0