Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.4     11        0   13.0
Qui1     Qui     0.0      4        0    4.5
Qui2     Qui     0.0     15        0   16.0
Qui3     Qui     0.0      7        0    7.0
Qui4     Qui     0.0      8        0    7.5
Rio1     Rio    70.0     10        0   10.0
Rio2     Rio    71.4      7        0    8.0
Rio3     Rio    50.0     10        0   11.0
Rio4     Rio    62.5      8        0    9.0